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Publications
| 2024 |
Structural variants in the Epb41l4a locus: TAD disruption and Nrep gene misregulation as hypothetical drivers of neurodevelopmental outcomes
Paul Salnikov, Alexey Korablev, Irina Serova, Polina Belokopytova, Aleksandra Yan, Yana Stepanchuk, Savelii Tikhomirov, Veniamin Fishman
[SCI REP-UK]
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TAD border deletion at the Kit locus causes tissue-specific ectopic activation of a neighboring gene.
Kabirova E, Ryzhkova A, Lukyanchikova V, Khabarova A, Korablev A, Shnaider T, Nuriddinov M, Belokopytova P, Smirnov A, Khotskin NV, Kontsevaya G, Serova I, Battulin N.
[NAT COMMUN]
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Towards Development of the 4C-Based Method Detecting Interactions of Plasmid DNA with Host Genome
Alexandra P Yan, Paul A Salnikov, Maria M Gridina, Polina S Belokopytova, Veniamin S Fishman
[BIOCHEMISTRY-MOSCOW+]
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| 2023 |
A Cre-LoxP-based approach for combinatorial chromosome rearrangements in human HAP1 cells
Anna Khabarova, Galina Koksharova, Pavel Salnikov, Polina Belokopytova, Roman Mungalov, Inna Pristyazhnuk, Artem Nurislamov, Maria Gridina, Veniamin Fishman
[CHROMOSOME RES]
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| 2022 |
3DGenBench: a web-server to benchmark computational models for 3D Genomics
Belokopytova, Emil Viesná, Mateusz Chiliński, Yifeng Qi, Hossein Salari, Marco Di Stefano, Andrea Esposito, Mattia Conte, Andrea M. Chiariello, Vladimir B. Teif, Dariusz Plewczynski, Bin Zhang, Daniel Jost, Veniamin Fishman
[NUCLEIC ACIDS RES]
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Anopheles mosquitoes reveal new principles of 3D genome organization in insects
Varvara Lukyanchikova*, Miroslav Nuriddinov*, Polina Belokopytova, Alena Taskina, Jiangtao Liang, Maarten Reijnders, Livio Ruzzante, Romain Feron, Robert Waterhouse, Yang Wu, Chunhong Mao, Zhijian Tu, Igor Sharakhov, and Veniamin Fishman
* authors contributed equally
[NAT COMMUN]
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| 2021 |
Derivation of Ringed Seal ( Phoca hispida) Induced Multipotent Stem Cells
Violetta R Beklemisheva, Polina S Belokopytova, Veniamin S Fishman, Aleksei G Menzorov
[CELL REPROGRAM]
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Here and there: the double-side transgene localization
P A Salnikov, A A Khabarova, G S Koksharova, R V Mungalov, P S Belokopytova, I E Pristyazhnuk, A R Nurislamov, P Somatich, M M Gridina, V S Fishman
[Vavilov journal of genetics and breeding]
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Predicting Genome Architecture: Challenges and Solutions
P. Belokopytova, V. Fishman
[Frontiers in Genetics]
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| 2020 |
Quantitative prediction of enhancer-promoter interactions
Polina Belokopytova, Miroslav Nuriddinov, Evgeniy Mozheiko, Daniil Fishman, Veniamin Fishman
[GENOME RES]
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| 2017 |
New genetic lineage within the Siberian subtype of tick-borne encephalitis virus found in Western Siberia, Russia
Sergey E Tkachev, Galina S Chicherina, Irina Golovljova, Polina S Belokopytova, Artem Yu Tikunov, Oksana V Zadora, Victor V Glupov, Nina V Tikunova
[INFECT GENET EVOL]
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