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Publications
| 2024 |
The Search for and Functional Analysis of Genetic Variants in microRNA-Binding Sites using Massively Parallel Reporter Assay
E Yu Rykova, N I Ershov, A O Degtyareva, L O Bryzgalov, E L Lushnikova
[B EXP BIOL MED+]
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| 2023 |
A New Cypovirus-1 Strain as a Promising Agent for Lepidopteran Pest Control
Martemyanov V.V., Akhanaev Y.B., Belousova I.A., Pavlusin S.V., Yakimova M.E., Kharlamova D.D., Ageev A.A., Golovina A.N., Astapenko S.A., Kolosov A.V., Ananko G.G., Taranov O.S., Shvalov A.N., Bodnev S.A., Ershov N.I., Grushevaya I.V., Timofeyev M.A., Tokarev Y.S.
[Microbiology spectrum]
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RatDEGdb: a knowledge base of differentially expressed genes in the rat as a model object in biomedical research
Chadaeva I.V., Filonov S.V., Zolotareva K.A., Khandaev B.M., Ershov N.I., Podkolodnyy N.L., Kozhemyakina R.V., Rasskazov D.A., Bogomolov A.G., Kondratyuk E.Yu., Klimova N.V., Shikhevich S.G., Ryazanova M.A., Fedoseeva L.A., Redina О.Е., Kozhevnikova O.S., Stefanova N.A., Kolosova N.G., Markel A.L., Ponomarenko M.P., Oshchepkov D.Yu.
[Vavilov journal of genetics and breeding]
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Unraveling the unusual subgenomic organization in the neopolyploid free-living flatworm Macrostomum lignano
Zadesenets KS, Ershov NI, Bondar NP, Rubtsov NB
[MOL BIOL EVOL]
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База знаний RatDEGdb по дифференциально экспрессирующимся генам крысы как модельного объекта биомедицинских исследований
Чадаева И.В., Филонов С.В., Золотарева К.А., Хандаев Б.М., Ершов Н.И., Подколодный Н.Л., Кожемякина Р.В., Рассказов Д.А., Богомолов А.Г., Кондратюк Е.Ю., Климова Н.В., Шихевич С.Г., Рязанова М.А., Федосеева Л.А., Редина О.Е., Кожевникова О.С., Стефанова Н.А., Колосова Н.Г., Маркель А.Л., Пономаренко М.П., Ощепков Д.Ю.
[Vavilov journal of genetics and breeding]
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| 2022 |
SNPs in 3'UTR miRNA Target Sequences Associated with Individual Drug Susceptibility
Elena Rykova, Nikita Ershov, Igor Damarov, Tatiana Merkulova
[INT J MOL SCI]
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Identification of Hypothalamic Long Noncoding RNAs Associated with Hypertension and the Behavior/Neurological Phenotype of Hypertensive ISIAH Rats
Fedoseeva L.A.; Ershov N.I.; Sidorenko I.A.; Markel A.L.; Redina O.E.
[Genes]
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| 2021 |
Hypothalamic Norepinephrine Concentration and Heart Mass in Hypertensive ISIAH Rats Are Associated with a Genetic Locus on Chromosome 18
Olga E. Redina; Svetlana E. Smolenskaya; Yulia K. Polityko; Nikita I. Ershov; Michael A. Gilinsky; Arcady L. Markel
[J. Pers. Med]
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Metagenomics data of microbial communities in bacterial mats and bottom sediments in water bodies within the Kurai Mercury Province (Gorny Altai, Russia).
Rozanov A. S., Myagkaya I. N., Korzhuk A. V., Ershov N. I., Kirichenko I. S., Gustaytis M. A., Saryg-ool B.Y., Malov V.I., Shipova A.A., Lazareva E.V. & Peltek, S. E.
[Data in Brief]
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Metagenomics data of microbial communities of natural organic matter from the dispersion train of sulfide tailings.
Korzhuk A. V., Myagkaya I. N., Rozanov A. S., Ershov N. I., Saryg-Ool B. O. Y., Malov V. I., Shipova A.A., Lazareva E.V. & Peltek, S. E.
[Data in Brief]
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Social defeat stress in adult mice causes alterations in gene expression, alternative splicing, and the epigenetic landscape of H3K4me3 in the prefrontal cortex: An impact of early-life stress
V.V.Reshetnikov
P.E.Kisaretova
N.I.Ershov
T.I.Merkulova
N.P.Bondar
[PROG NEURO-PSYCHOPH]
|
| 2020 |
Creation of an online platform for identification of microorganisms: peak picking or full-spectrum analysis
Starostin K.V., Demidov E.A., Ershov N.I., Bryanskaya A.V., Efimov V.M., Shlyakhtun V.N., Peltek S.E.
[Frontiers in Microbiology]
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Data of correlation analysis between the density of H3K4me3 in promoters of genes and gene expression: data from RNA-seq and ChIP-seq analyses of the murine prefrontal cortex
V.V.Reshetnikov, P.E.Kisaretova, N.I.Ershov, T.I.Merkulova, N.P.Bondar
[Data in Brief]
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Genes associated with cognitive performance in the Morris water maze: an RNA-seq study
Vasiliy V. Reshetnikov, Polina E. Kisaretova, Nikita I. Ershov, Anastasia S. Shulyupova, Dmitry Yu. Oshchepkov, Natalia V. Klimova, Anna V. Ivanchihina, Tatiana I. Merkulova, Natalia P. Bondar
[SCI REP-UK]
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Genetic polymorphism of experimentally produced forms of arterial hypertension
O. E. Redina, V. A. Devyatkin, N. I. Ershov, A. L. Markel
[RUSS J GENET+]
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Genomics and proteomics of the liver fluke Opisthorchis felineus
Mordvinov V.A., Ershov N.I., Zaparina O.G., Pakharukova M.Y.
[Vavilov journal of genetics and breeding]
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Phylogeny of the Eisenia nordenskioldi complex based on mitochondrial genomes
Shekhovtsov S.V., Golovanova E.V., Ershov N.I., Poluboyarova T.V., Berman D.I., Bulakhova N.A., Szederjesi T., Peltek S.E.
[EUR J SOIL BIOL]
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Апробация различных вариантов RNA-seq для идентификации аутронов генов у плоского червя Opisthorchis felineus
Н.И. Ершов, Д.Е. Маслов, Н.П. Бондарь
[Vavilov journal of genetics and breeding]
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Влияние культивирования эмбрионов на онтогенез потомства у млекопитающих
Раннева СВ, Брусенцев ЕЮ, Игонина ТН, Рагаева ДС, Рожкова ИН, Ершов НИ, Левинсон АЛ, Амстиславский СЯ
[Онтогенез]
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Генетический полиморфизм экспериментально воспроизводимых форм артериальной гипертонии
Редина О.Е., Девяткин В.А., Ершов Н.И., Маркель А.Л.
[Генетика]
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| 2019 |
Molecular sexing of Lepidoptera
Irina Belousova, Nikita Ershov, Sergey Pavlushin, Yury Ilinsky, Vyacheslav Martemyanov
[J INSECT PHYSIOL]
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New insights from Opisthorchis felineus genome: update on genomics of the epidemiologically important liver flukes
Nikita I. Ershov, Viatcheslav A. Mordvinov, Egor B. Prokhortchouk, Mariya Y. Pakharukova, Konstantin V. Gunbin, Kirill Ustyantsev, Mikhail A. Genaev, Alexander G. Blinov, Alexander Mazur, Eugenia Boulygina, Svetlana Tsygankova, Ekaterina Khrameeva, Nikolay Chekanov, Guangyi Fan, An Xiao, He Zhang, Xun Xu, Huanming Yang, Victor Solovyev, Simon Ming-Yuen Lee, Xin Liu, Dmitry A. Afonnikov, Konstantin G. Skryabin
[BMC GENOMICS]
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Rat prefrontal cortex transcriptome: effects of aging and sporadic Alzheimer’s disease-like pathology
Stefanova N.A., Ershov N.I., Maksimova K.Yi., Muraleva N.A., Tyumentsev M.A., Kolosova N.A.
[J Gerontol A Biol Sci Med Sci]
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Suppression of Alzheimer’s Disease-Like Pathology
Progression by Mitochondria-Targeted Antioxidant SkQ1: A
Transcriptome Profiling Study
Stefanova NA, Ershov NI, Kolosova NG.
[OXID MED CELL LONGEV]
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The differences in brain stem transcriptional profiling in hypertensive ISIAH and normotensive WAG rats
Fedoseeva L.A., Klimov L.O., Ershov N.I., Efimov V.M., Markel A.L., Orlov Y.L., & Redina O.E.
[BMC GENOMICS]
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Transcriptomic analysis confirms differences among nuclear genomes of cryptic earthworm lineages living in sympatry
Shekhovtsov S.V., Ershov N.I., Vasiliev G.N., Peltek S.E.
[BMC EVOL BIOL]
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| 2018 |
Consequences of early life stress on genomic landscape of H3K4me3 in prefrontal cortex of adult mice
Nikita I. Ershov, Natalya P. Bondar, Arina A. Lepeshko, Vasiliy V. Reshetnikov, Julia A. Ryabushkina, Tatiana I. Merkulova
[BMC GENOMICS]
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Molecular adaptations to social defeat stress and induced depression in mice
Natalya Bondar, Leonid Bryzgalov, Nikita Ershov, Fedor Gusev, Vasiliy Reshetnikov, Damira Avgustinovich, Mikhail Tenditnik, Evgeny Rogaev, Tatiana Merkulova
[MOL NEUROBIOL]
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| 2017 |
Comparison of tolerance to sunlight between spatially distant and genetically different strains of Lymantria dispar nucleopolyhedrovirus
Akhanaev Y.B., Belousova I.A., Ershov N.I., Nakai M., Martemyanov V.V., Glupov V.V.
[PloS One]
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ABC transporters in the liver fluke Opisthorchis felineus.
Mordvinov VA, Ershov NI, Pirozhkova DS, Pakharukov YV, Pakharukova MY.
[MOL BIOCHEM PARASIT]
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Chromosome Evolution in the Free-Living Flatworms: First Evidence of Intrachromosomal Rearrangements in Karyotype Evolution of Macrostomum lignano (Platyhelminthes, Macrostomida)
Zadesenets K.S., Ershov N.I., Berezikov E., Rubtsov N.B.
[Genes]
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Influence of magnetic field on enzymatic ONOO– production
Dranova T., Petrovskii D., Ershov N., Slepneva I., Stass D
[JPCS]
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Soluble epoxide hydrolase (sEH) as a potential target for arterial hypertension therapy
O. E. Redina, T. O. Abramova, L. O. Klimov, M. A. Ryazanova, L. A. Fedoseeva, S. E. Smolenskaya, N. I. Ershov, A. D. Dubinina, and A. L. Markel
[RUSS J GENET+]
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Strain-specific single-nucleotide polymorphisms in hypertensive ISIAH rats
Ershov NI, Markel AL, Redina OE.
[BIOCHEMISTRY-MOSCOW+]
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Whole-genome sequencing of eukaryotes: from sequencing of DNA fragments to a genome assembly.
Zadesenets KS, Ershov NI, Rubtsov NB
[RUSS J GENET+]
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Однонуклеотидные полиморфизмы, специфичные для гипертензивных крыс линии НИСАГ
Н. И. Ершов, А. Л. Маркель, О. Е. Редина
[Биохимия]
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Растворимая эпоксидгидролаза (sEH) как потенциальная мишень для лекарственной терапии артериальной гипертензии
О. Е. Редина, Т. О. Абрамова, Л. О. Климов, М. А. Рязанова, Л. А. Федосеева, С. Э. Смоленская, Н. И. Ершов, А. Д. Дубинина, А. Л. Маркель
[RUSS J GENET+]
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| 2016 |
COMPARATIVE TRANSCRIPTIONAL PROFILING OF HYPOTHALAMUS IN ISIAH RATS WITH INHERITED STRESS-INDUCED ARTERIAL HYPERTENSION AND NORMOTENSIVE WISTAR ALBINO GLAXO RATS
Klimov Leonid, Ershov Nikita, Efimov Vadim, Markel Arkady, Redina Olga
[J HYPERTENS]
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Comparative transcriptional profiling of renal cortex in rats with inherited stress-induced arterial hypertension and normotensive Wistar Albino Glaxo rats
Larisa A. Fedoseeva, Marina A. Ryazanova, Nikita I. Ershov, Arcady L. Markel, Olga E. Redina
[BMC GENET]
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Genome-wide transcriptome analysis of hypothalamus in rats with inherited stress-induced arterial hypertension
Leonid O. Klimov, Nikita I. Ershov, Vadim M. Efimov, Arcady L. Markel and Olga E. Redina
[BMC GENET]
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Molecular determinants of the adrenal gland functioning related to stress-sensitive hypertension in ISIAH rats
Larisa A. Fedoseeva, Leonid O. Klimov, Nikita I. Ershov, Yury V. Alexandrovich, Vadim M. Efimov, Arcady L. Markel, Olga E. Redina
[BMC GENOMICS]
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Phenological asynchrony between host plant and gypsy moth reduces insect gut microbiota and susceptibility to Bacillus thuringiensis
Vyacheslav V. Martemyanov, Irina A. Belousova, Sergey V. Pavlushin, Ivan M. Dubovskiy, Nikita I. Ershov, Tatyana Y. Alikina, Marsel R. Kabilov, Victor V. Glupov
[Ecology and Evolution]
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THE GENE-EXPRESSION PROFILE OF RENAL CORTEX IN RATS WITH INHERITED STRESS-INDUCED ARTERIAL HYPERTENSION (ISIAH)
Ryazanova Marina; Fedoseeva Larisa; Ershov Nikita; Markel Arcady; Redina Olga
[J HYPERTENS]
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The gene-expression profile of renal medulla in ISIAH rats with inherited stress-induced arterial hypertension
Marina A. Ryazanova, Larisa A. Fedoseeva, Nikita I. Ershov, Vadim M. Efimov, Arcady L. Markel and Olga E. Redina
[BMC GENET]
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Whole transcriptome profiling of adult and infective stages of the trematode Opisthorchis felineus
Pomaznoy MY, Logacheva MD, Young ND, Penin AA, Ershov NI, Katokhin AV, Mordvinov VA.
[PARASITOL INT]
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| 2015 |
De Novo Assembly of the Pea (Pisum sativum L.) Nodule Transcriptome
Vladimir A. Zhukov, Alexander I. Zhernakov, Olga A. Kulaeva, Nikita I. Ershov, Alexey Y. Borisov, and Igor A. Tikhonovich
[International Journal of Genomics]
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Identification of functional networks associated with cell death in the retina of OXYS rats during the development of retinopathy
Telegina DV, Korbolina EE, Ershov NI, Kolosova NG, Kozhevnikova OS.
[CELL CYCLE]
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The decreased expression of genes controlling the vascular tone in the kidneys of ISIAH rats with stress-induced arterial hypertension
O. E. Redina, L. O. Klimov, N. I. Ershov, T. O. Abramova, L. N. Ivanova, and A. L. Markel.
[Russian Journal of Genetics: Applied Research]
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Изменения транскриптома префронтальной коры мозга при развитии признаков болезни Альцгеймера у крыс OXYS.
Стефанова Н.А., Корболина Е.Е., Ершов Н.И., Рогаев Е.И., Колосова Н.Г.
[Vavilov journal of genetics and breeding]
|
| 2014 |
Analysis of the Placental Tissue Transcriptome of Normal and Preeclampsia Complicated Pregnancies
E. A. Trifonova, T. V. Gabidulina, N. I. Ershov, V. N. Serebrova, A. Yu. Vorozhishcheva, V. A. Stepanov
[Acta Naturae]
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Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data
Victor G Levitsky, Ivan V Kulakovskiy, Nikita I Ershov, Dmitry Yu Oschepkov, Vsevolod J Makeev, T C Hodgman, Tatyana I Merkulova
[BMC GENOMICS]
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Application of quantitative trait locus mapping and transcriptomics to studies of the senescence-accelerated phenotype in rats.
Korbolina EE, Ershov NI, Bryzgalov LO, Kolosova NG
[BMC GENOMICS]
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Identification of thyroid hormone receptor homologs in the fluke Opisthorchis felineus (Platyhelminthes).
Pakharukova MY, Ershov NI, Vorontsova EV, Shilov AG, Merkulova TI, Mordvinov VA.
[MOL BIOCHEM PARASIT]
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Сниженный уровень экспрессии генов, контролирующих тонус сосудов в почках крыс НИСАГ со стресс-зависимой артериальной гипертензией.
О.Е. Редина, Л.О. Климов, Н.И. Ершов, Т.О. Абрамова, Л.Н. Иванова, А.Л. Маркель.
[Vavilov journal of genetics and breeding]
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| 2013 |
Rat retinal transcriptome: Effects of aging and AMD-like retinopathy.
Kozhevnikova OS, Korbolina EE, Ershov NI, Kolosova NG
[CELL CYCLE]
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| 2012 |
Cytochrome P450 in fluke Opisthorchis felineus: Identification and characterization.
Pakharukova MY, Ershov NI, Vorontsova EV, Katokhin AV, Merkulova TI, Mordvinov VA
[MOL BIOCHEM PARASIT]
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| 2011 |
Analysis of Data on Large Scale Chromatin Immunoprecipitation by Recognition of Transcription Factor Binding Sites
VG Levitskii, GV Vasil’ev, DYu Oshchepkov, NI Ershov, and TI Merkulova
[Russian Journal of Genetics: Applied Research]
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Разработка методов распознования сайтов связывания транскрипционных факторов FoxA, их экспериментальная верификация и использование для анализа данных массовой иммунопреципитации хроматина
Левицкий В. Г., Ощепков Д. Ю., Ершов Н. И., Брызгалов Л. О., Антонцева Е. В., Васильев Г. В., Меркулова Т. И., Колчанов Н. А.
[Doklady Akademii Nauk]
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| 2010 |
Анализ результатов эксперимента по массовой иммунопреципитации хроматина с помощью методов распознавания сайтов связывания транскрипционных факторов
Левицкий В.Г., Васильев Г.В., Ощепков Д.Ю., Ершов Н.И., Меркулова Т.И.
[Информационный вестник ВОГИС]
|
| 2009 |
Изменения транскриптома печени крысы под действием гепатоканцерогенного для этих животных 3МЕДАБ и неканцерогенного ОАТ
Н.И. Ершов, В.Г. Левицкий, Д.Ю. Ощепков, О.В. Вишневский, Л.О. Брызгалов, Е.В. Антонцева, Т.И. Меркулова.
[Информационный вестник ВОГИС]
|
| 2008 |
Выявление генов-мишеней транскрипционных факторов FOXA, связанных с регуляцией пролиферации
Брызгалов Л.О., Ершов Н.И., Ощепков Д.Ю., Каледин В.И., Меркулова Т.И.
[BIOCHEMISTRY-MOSCOW+]
|
| 2007 |
Транскрипционные факторы FOXA определяют амплитуду глюкокортикоидной индукции тирозинаминотрансферазы у мышей
Брызгалов Л.О., Ершов Н.И., Ильницкая С.И.
[B EXP BIOL MED+]
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| 2006 |
An effect of the microsporidian Vairimorpha ephestiae (Microsporidia: Burenellidae) on activity and spectrum of nonspecific esterases in different tissues of the greater wax moth galleria mellonella (Lepidoptera: Pyralidae) larvae
Vorontsova Ia.L., Ershov N.I., Glupov V.V.
[Паразитология]
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