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Publications
| 2024 |
AEGILOPS TAUSCHII (POACEAE, POALES) PHYLOGENETIC TREE BASED ON TRANSCRIPTOMES SEQUENCING
A. J. Dudnikov, G. V. Vasiliev, M. Hao, D.-C. Liu, F. Xing,
M. Mansouri, D. A. Afonnikov, N. A. Shmakov
[Acta Botanica Hungarica]
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TauL1, TauL2 and TauL3 gene-pools of Aegilops tauschii essentially differ in their genetic expression patterns
Alexander Ju. Dudnikov, Gennady V. Vasiliev, Ming Hao, Deng-Cai Liu, Fan Xing, Mehdi Mansouri, Dmitry A. Afonnikov, Nikolay A. Shmakov
[Botanica Serbica]
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| 2023 |
Analysis of Genome Structure and Its Variations in Potato
Cultivars Grown in Russia
Dmitry I. Karetnikov, Gennady V. Vasiliev, Stepan V. Toshchakov, Nikolay A. Shmakov, Mikhail A. Genaev, Mikhail A. Nesterov, Salmaz M. Ibragimova, Daniil A. Rybakov,
Tatjana A. Gavrilenko, Elena A. Salina, Maxim V. Patrushev, Alex V. Kochetov and Dmitry A. Afonnikov
[INT J MOL SCI]
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Three Cycles of Continuous Propagation of a Severe PSTVd
Strain NicTr-3 in Solanum lycopersicum cv. Rutgers Resulted in Its Attenuation and Very Mild Disease Symptoms in Potato
Alex V. Kochetov, Nikolay Shmakov, Dmitry A. Afonnikov, Gennady V. Vasiliev, Natalja V. Shatskaya, Anastasiya A. Egorova, Nina V. Mironenko, Nina M. Lashina, Alexander V. Khiutti and Olga S. Afanasenko
[Agronomy]
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WAX INDUCER 1 Regulates β-Diketone Biosynthesis by Mediating Expression of the Cer-cqu Gene Cluster in Barley
Gerasimova, S.V.; Kolosovskaya, E.V.; Vikhorev, A.V.; Korotkova, A.M.; Hertig, C.W.; Genaev, M.A.; Domrachev, D.V.; Morozov, S.V.; Chernyak, E.I.; Shmakov, N.A.; Vasiliev, G.V.; Kochetov, A.V.; Kumlehn, J.; Khlestkina, E.K.
[INT J MOL SCI]
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| 2022 |
Features of activity of the phenylpropanoid biosynthesis pathway in melanin-accumulating barley grains
Anastasiia Y. Glagoleva, Alexander V. Vikhorev, Nikolay A. Shmakov, Sergey V. Morozov, Elena I. Chernyak, Gennady V. Vasiliev, Natalia V. Shatskaya, Elena K. Khlestkina, Olesya Y. Shoeva
[Frontiers in Plant Science]
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QTL Analysis for Bread Wheat Seed Size, Shape and Color
Characteristics Estimated by Digital Image Processing
Mian Abdur Rehman Arif, Evgenii G. Komyshev, Mikhail A. Genaev, Vasily S. Koval, Nikolay
A. Shmakov, Andreas Börner and Dmitry A. Afonnikov
[Plants]
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| 2021 |
NLR Genes Related Transcript Sets in Potato Cultivars Bearing Genetic Material of Wild Mexican Solanum Species
Kochetov A.V., Afonnikov D.A., Shmakov N.A., Vasiliev G.V., Antonova O.Y., Shatskaya N.V., Glagoleva A.Y., Ibragimova S.M., Khiutti A., Afanasenko O.S., Gavrilenko T.A.
[Agronomy]
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Рибосомное профилирование как инструмент исследования трансляции у растений: основные итоги, проблемы и перспективы
Афонников, Д. А., Синицына, О. И., Голубева, Т. С., Шмаков, Н. А., Кочетов, А. В.
[Vavilov journal of genetics and breeding]
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Улучшение качества сборки de novo транскриптомов ячменя на основе гибридного подхода для линий с изменениями окраски колоса и стебля
Шмаков Николай Александрович
[Vavilov journal of genetics and breeding]
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| 2020 |
The mechanism of potato resistance to
Globodera rostochiensis: comparison of root
transcriptomes of resistant and susceptible
Solanum phureja genotypes
Alex V. Kochetov, Anastasiya A. Egorova, Anastasiya Y. Glagoleva, Kseniya V. Strygina, Elena K. Khlestkina,
Sophia V. Gerasimova, Natalja V. Shatskaya, Gennady V. Vasilyev, Dmitry A. Afonnikov, Nikolay A. Shmakov,
Olga Y. Antonova, Natalia V. Alpatyeva, Alexander Khiutti, Olga S. Afanasenko and Tatjana A. Gavrilenko
[BMC PLANT BIOL]
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| 2017 |
Achievements and Prospects of Applying High-Throughput Sequencing Techniques to Potato Genetics and Breeding
Bykova I.V., Shmakov N.A., Afonnikov D.A., Kochetov A.V., Khlestkina E.K.
[Russian Journal of Genetics: Applied Research]
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Differential expression of NBS-LRR-encoding genes in the root transcriptomes of two Solanum phureja genotypes with contrasting resistance to Globodera rostochiensis
Alex V. Kochetov, Anastasiya Y. Glagoleva, Kseniya V. Strygina, Elena K. Khlestkina, Sophia V. Gerasimova, Salmaz M. Ibragimova, Natalja V. Shatskaya, Gennady V. Vasilyev, Dmitry A. Afonnikov, Nikolay A. Shmakov, Olga Y. Antonova, Tatyana A. Gavrilenko, Natalia V. Alpatyeva, Alexander Khiutti, Olga S. Afanasenko
[BMC PLANT BIOL]
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Metabolic pathways and genes identified by RNA-seq analysis of barley near-isogenic lines differing by allelic state of the Black lemma and pericarp (Blp) gene
Anastasiya Y. Glagoleva, Nikolay A. Shmakov, Olesya Y. Shoeva, Gennady V. Vasiliev, Natalia V. Shatskaya, Andreas Börner, Dmitry A. Afonnikov, Elena K. Khlestkina
[BMC PLANT BIOL]
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RNAseq-BASED DECIFERING OF MOLECULAR MECHANISMS UNDERLYING TRAIT FORMATION: NON-ALTERNATIVE WAY IN CASE OF IMPEDED METABOLITE IDENTIFICATION
Glagoleva A.Y., Shmakov N.A., Shoeva O. Y., Vasiliev G.V., Shatskaya N.V., Börner A., Afonnikov D.A., Khlestkina E.K.
[Acta Naturae]
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Достижения и перспективы использования методов высокопроизводительного секвенирования в генетике и селекции картофеля
Быкова И.В., Шмаков Н.А., Афонников Д.А., Кочетов А.В., Хлесткина Е.К.
[Vavilov journal of genetics and breeding]
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| 2016 |
Identification of nuclear genes controlling chlorophyll synthesis in barley by RNA-seq
Shmakov N.A., Vasiliev G.V., Shatskaya N.V., Doroshkov A.V., Gordeeva E.I., Afonnikov D.A., Khlestkina E.K.
[BMC PLANT BIOL]
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| 2014 |
Эффективность использования генов bmy2, waxy и внутренних транскрибируемых спейсеров генов рибосомных рнк в качестве маркеров для изучения генетического разнообразия видов рода Elymus.
Шмаков Н.А., Афонников Д.А., Белавин П.А., Агафонов А.В.
[Vavilov journal of genetics and breeding]
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