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Nikita Ivanisenko
Is not an employee of the Institute
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Publications
| 2024 |
Modulation of extrinsic apoptotic pathway by intracellular glycosylation
Kamil Seyrek, Nikita V. Ivanisenko, Corinna König, Inna N. Lavrik
[TRENDS CELL BIOL]
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| 2023 |
PROSTATA: a framework for protein stability assessment
using transformers
Dmitriy Umerenkov, Fedor Nikolaev, Tatiana I. Shashkova, Pavel V. Strashnov, Maria Sindeeva, Andrey Shevtsov, Nikita V. Ivanisenko, Olga L. Kardymon
[BIOINFORMATICS]
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Prioritization of potential pharmacological targets for thedevelopment of anti-hepatocarcinoma drugs modulating the extrinsic apoptosis pathway: the reconstruction andanalysis of associative gene networks help.
Demenkov P.S., Antropova E.A., Adamovskaya A.V., Mishchenko E.L., Khlebodarova T.M., Ivanisenko T.V., Ivanisenko N.V., Venzel A.S., Lavrik I.N., Ivanisenko V.A.
[Vavilov journal of genetics and breeding]
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Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection
Evgeniya A. Antropova, Tamara M. Khlebodarova, Pavel S. Demenkov, Anastasiia R.
Volianskaia, Artur S. Venzel, Nikita V. Ivanisenko, Alexandr D. Gavrilenko, Timofey V.
Ivanisenko, Anna V. Adamovskaya, Polina M. Revva, Nikolay A. Kolchanov, Inna N. Lavrik
and Vladimir A. Ivanisenko
[J INTEGR BIOINFORM]
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Приоритизация потенциальных фармакологических мишеней для создания лекарств против гепатокарциномы, модулирующих внешний путь апоптоза, на основе реконструкции и анализа ассоциативных генных сетей
П. С. Деменков, Е. А. Антропова, А. В. Адамовская, Е. Л. Мищенко, Т. М. Хлебодарова, Т. В. Иванисенко, Н. В. Иванисенко, А. С. Вензель, И. Н. Лаврик, В. А. Иванисенко
[Vavilov journal of genetics and breeding]
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| 2022 |
Computer analysis of regulation of hepatocarcinoma marker genes hypermethylated by HCV proteins.
Antropova E.A., Khlebodarova T.M., Demenkov P.S., Venzel A.S., Ivanisenko N.V., Gavrilenko A.D., Ivanisenko T.V., Adamovskaya A.V., Revva P.M., Lavrik I.N., Ivanisenko V.A.
[Vavilov journal of genetics and breeding]
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Computer analysis of the relation between hydrogen bond stability in SOD1 mutants and the survival time of amyotrophic lateral sclerosis patients
Alemasov, N. A., Timofeev, V. S., Ivanisenko, N. V., Kolchanov, N. A., & Ivanisenko, V. A.
[J MOL GRAPH MODEL]
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Development of Small Molecules Targeting Procaspase-8 at the DISC
J. Espe, N. V. Ivanisenko, L. K. Hillert-Richter, V. A. Ivanisenko, I. N. Lavrik
[Cell and Tissue Biology]
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Impact of human CD95 mutations on cell death and autoimmunity: a model.
Seyrek K., Ivanisenko N. V., Wohlfromm F., Espe J., Lavrik I. N.
[TRENDS IMMUNOL]
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Regulation of extrinsic apoptotic signaling by c-FLIP: towards targeting cancer networks
Nikita V. Ivanisenko, Kamil Seyrek, Laura K. Hillert Richter, Corinna König, Johannes Espe, Kakoli Bose, Inna N. Lavrik
[Trends in Cancer]
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Компьютерный анализ особенностей регуляции гиперметилированных маркерных генов гепатокарциномы вирусными белками гепатита С.
Антропова Е.А., Хлебодарова Т.М., Деменков П.С., Вензель А.С., Иванисенко Н.В., Гавриленко А.Д., Иванисенко Т.В., Адамовская А.В., Ревва П.М., Лаврик И.Н., Иванисенко В.А.
[Vavilov journal of genetics and breeding]
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| 2021 |
Correlation of Metabolic Profiles of Plasma and Cerebrospinal Fluid of High-Grade Glioma Patients
A. D. Rogachev, N. A. Alemasov, V. A. Ivanisenko, N. V. Ivanisenko, E. V. Gaisler, O. S. Oleshko, S. V.
Cheresiz, S. V. Mishinov, V. V. Stupak, A. G. Pokrovsky
[Metabolites]
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| 2020 |
ANDDigest: a new web-based module of ANDSystem for the search of knowledge in the scientific literature
Timofey V. Ivanisenko, Olga V. Saik, Pavel S. Demenkov, Nikita V. Ivanisenko, Alexander N. Savostianov, Vladimir A. Ivanisenko
[BMC BIOINFORMATICS]
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Controlling Cell Death through Post-translational Modifications of DED Proteins
Kamil Seyrek, Nikita V. Ivanisenko, Max Richter, Laura K. Hillert, Corinna König, Inna N. Lavrik
[TRENDS CELL BIOL]
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Design, Synthesis and Molecular Modeling Study of Conjugates of ADP and Morpholino Nucleosides as A Novel Class of Inhibitors of PARP-1, PARP-2 and PARP-3
Yuliya V. Sherstyuk, Nikita V. Ivanisenko, Alexandra L. Zakharenko, Maria V. Sukhanova,
Roman Y. Peshkov, Ilia V. Eltsov , Mikhail M. Kutuzov, Tatiana A. Kurgina,
Ekaterina A. Belousova, Vladimir A. Ivanisenko, Olga I. Lavrik, Vladimir N. Silnikov and
Tatyana V. Abramova
[INT J MOL SCI]
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Dissecting DISC regulation via pharmacological targeting of caspase-8/c-FLIPL heterodimer
Laura K. Hillert, Nikita V. Ivanisenko, Denise Busse, Johannes Espe, Corinna König, Sergey E. Peltek, Nikolai A. Kolchanov, Vladimir A. Ivanisenko, Inna N. Lavrik
[CELL DEATH DIFFER]
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Learning the changes of barnase mutants thermostability from structural fluctuations obtained using anisotropic network modeling
Nikolay A.Alemasov, Nikita V. Ivanisenko, Vladimir A.Ivanisenko
[J MOL GRAPH MODEL]
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Mathematical Modeling Reveals the Importance of the DED Filament Composition in the Effects of Small Molecules Targeting Caspase-8/c-FLIPL Heterodimer
N. V. Ivanisenko, I. N. Lavrik
[BIOCHEMISTRY-MOSCOW+]
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Pharmacological targeting of c-FLIPL and Bcl-2 family members promotes apoptosis in CD95L-resistant cells.
Corinna König, Laura K. Hillert-Richter, Nikita V. Ivanisenko, Vladimir A. Ivanisenko, Inna N. Lavrik
[SCI REP-UK]
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The role of death domain proteins in host response upon SARS-CoV-2 infection: modulation of programmed cell death and translational applications
Nikita V. Ivanisenko, Kamil Seyrek, Nikolay A. Kolchanov, Vladimir A. Ivanisenko, Inna N. Lavrik
[Cell Death Discovery]
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| 2019 |
DNase and RNase activities of fresh cow milk lactoferrin
Svetlana E. Soboleva, Olga D. Zakharova, Sergey E. Sedykh, Nikita V. Ivanisenko, Valentina N. Buneva, Georgy A. Nevinsky
[J MOL RECOGNIT]
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Delineating the role of c-FLIP/NEMO interaction in the CD95 network via rational design of molecular probes
Nikita V. Ivanisenko, Jörn H. Buchbinder, Johannes Espe, Max Richter, Miriam Bollmann, Laura K. Hillert, Vladimir A. Ivanisenko, Inna N. Lavrik
[BMC GENOMICS]
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ESEEM Reveals Bound Substrate Histidine in the ABC Transporter HisQMP2
Nikolay Isaev, Johanna Heuveling, Nikita Ivanisenko, Erwin Schneider, Heinz‑Jürgen Steinhof
[APPL MAGN RESON]
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Improved regression model to predict an impact of SOD1 mutations on ALS patients survival time based on analysis of hydrogen bond stability
Nikolay A.Alemasov, Nikita V. Ivanisenko, Bhupesh Taneja, Vibha Taneja, Srinivasan Ramachandran, Vladimir A. Ivanisenko
[J MOL GRAPH MODEL]
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Long and short isoforms of c-FLIP act as control checkpoints of DED filament assembly.
Hillert LK, Ivanisenko NV, Espe J, König C, Ivanisenko VA, Kähne T, Lavrik IN
[ONCOGENE]
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Mechanisms of Procaspase-8 Activation in the Extrinsic Programmed Cell Death Pathway
Ivanisenko N.V., Lavrik I.N.
[Molecular Biology]
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Organization and evolution of the chalcone synthase gene family in bread wheat and relative species
Anastasia Y. Glagoleva, Nikita V. Ivanisenko, Elena K. Khlestkina
[BMC GENET]
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| 2018 |
Antibodies against H3 and H4 histones from the sera of HIV‐infected patients catalyze site‐specific degradation of these histones. Journal of Molecular Recognition.
Baranova S. V., Dmitrenok P. S., Zubkova A. D., Ivanisenko N. V., Odintsova E. S., Buneva V. N., Nevinsky G. A.
[J MOL RECOGNIT]
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How human serum albumin recognizes DNA and RNA.
Alinovskaya L. I., Sedykh S. E., Ivanisenko N. V., Soboleva S. E., Nevinsky G. A.
[BIOL CHEM]
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Molecular mechanisms underlying the impact of mutations in SOD1 on its conformational properties associated with amyotrophic lateral sclerosis as revealed with molecular modelling
Nikolay A. Alemasov, Nikita V. Ivanisenko, Srinivasan Ramachandran, Vladimir A. Ivanisenko
[BMC STRUCT BIOL]
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Компьютерное предсказание патогенных свойств мутантов белка SOD1, ассоциированных с боковым амиотрофическим склерозом
Алемасов Н.А., Иваниесенко Н.В., Иванисенко В.А.
[Международный журнал гуманитарных и естественных наук]
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| 2017 |
Antibodies to H1 histone from the sera of HIV-infected patients recognize and catalyze site-specific degradation of this histone
Svetlana V. Baranova, Pavel S. Dmitrienok, Nikita V. Ivanisenko, Valentina N. Buneva, Georgy A. Nevinsky
[J MOL RECOGNIT]
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Antibodies to H2a and H2b histones from the sera of HIV-infected patients catalyze site-specific degradation of these histones
Baranova S. V., Dmitrenok P. S., Ivanisenko N. V., Buneva V. N., Nevinsky G. A.
[MOL BIOSYST]
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Integrated mathematical models for describing complex biological processes.
Mishchenko E. L., Petrovskaya O. V., Mishchenko A. M., Petrovskiy E. D., Ivanisenko N. V., Ivanisenko V. A.
[BIOPHYSICS]
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Molecular mechanisms of the interaction between the processes of the cell response to mechanical stress and neuronal apoptosis in primary open-angle glaucoma
O. V. Saik, N. A. Konovalova, P. S. Demenkov, N. V. Ivanisenko, T. V. Ivanisenko, D. E. Ivanoshchuk, O. S. Konovalova, O. A. Podkolodnaya, I. N. Lavrik, N. A. Kolchanov, V. A. Ivanisenko
[Russian Journal of Genetics: Applied Research]
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Regression model for predicting pathogenic properties of SOD1 mutants based on the analysis of conformational stability and conservation of hydrogen bonds.
Alemasov N. A., Ivanisenko N. V., Ivanisenko V. A.
[J MOL GRAPH MODEL]
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SNP_TATA_Comparator: genomewide landmarks for preventive personalized medicine.
Ponomarenko M, Rasskazov D, Chadaeva I, Sharypova E, Ponomarenko P, Arkova O, Kashina E, Ivanisenko N, Zhechev D, Savinkova L, Kolchanov N.
[Front Biosci (Schol Ed)]
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| 2016 |
Dynamic properties of SOD1 mutants can predict survival time of patients carrying familial amyotrophic lateral sclerosis
Nikolay A. Alemasova, Nikita V. Ivanisenko, Sergey P. Medvedev, Suren M. Zakian, Nikolay A. Kolchanov & Vladimir A. Ivanisenko
[Journal Of Biomolecular Structure & Dynamics]
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Molecular associations of Primary Open-Angle Glaucoma with potential comorbid diseases (POAG-associome)
Olga V Saik, Natalia A Konovalova, Pavel S Demenkov, Timofey V Ivanisenko, Evgeny D Petrovskiy, Nikita V Ivanisenko, Dinara E Ivanoshchuk, Maria N Ponomareva, Olga S Konovalova, Inna N. Lavrik, Nikolay A Kolchanov, Vladimir A Ivanisenko
[Biotecnología Aplicada]
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Дизайн и проверка действия малых химических соединений, направленных на ингибирование белка FADD
Н.В. Иванисенко, Л. Хиллерт, В.А. Иванисенко, И.Н. Лаврик
[Vavilov journal of genetics and breeding]
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Компьютерное моделирование пространственных структур пептидов из MUC1, способных ингибировать апоптоз
Н.В. Иванисенко, И.Н. Лаврик, В.А. Иванисенко
[Vavilov journal of genetics and breeding]
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Молекулярно-генетические механизмы взаимодействия процессов ответа клетки на механический стресс и нейронального апоптоза при первичной открытоугольной глаукоме
Сайк О.В., Коновалова Н.А., Деменков П.С., Иванисенко Н.В., Иванисенко Т.В., Иванощук Д.Е., Пономарева М.Н., Коновалова О.С., Подколодная О.А., Лаврик И.Н., Колчанов Н.А., Иванисенко В.А.
[Vavilov journal of genetics and breeding]
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Молекулярно-генетические механизмы регуляции процессов апоптоза белками вируса гепатита С.
Сайк О. В., Деменков П. С., Иванисенко Н. В., Иванисенко Т. В., Лаврик И. Н., Иванисенко В. А.
[Проблемы современной науки и образования]
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Структурное моделирование мод связывания НАД+ с ПАРП-1
Иванисенко Н.В., Жечев Д.А., Иванисенко В.А.
[Vavilov journal of genetics and breeding]
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| 2015 |
ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology
Vladimir A Ivanisenko, Olga V Saik, Nikita V Ivanisenko, Evgeny S Tiys, Timofey V Ivanisenko, Pavel S Demenkov and Nikolay A Kolchanov
[BMC SYST BIOL]
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Structural and dynamic properties of mutant SOD1 proteins associated with amyotrophic lateral sclerosis
Alemasov, N. A., Ivanisenko, N. V., Ivanisenko, V. A.
[Russian Journal of Genetics: Applied Research]
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Systemic lupus erythematosus: molecular cloning and analysis of recombinant monoclonal kappa light chain NGTA2-Me-pro-ChTr possessing two different activities—trypsin-like and metalloprotease
Timofeeva A. M., Ivanisenko N. V., Buneva V. N., Nevinsky G. A.
[INT IMMUNOL]
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| 2014 |
A New Stochastic Model for Subgenomic Hepatitis C Virus Replication Considers Drug Resistant Mutants
Nikita V. Ivanisenko, Elena L. Mishchenko, Ilya R. Akberdin, Pavel S. Demenkov, Vitaly A. Likhoshvai, Konstantin N. Kozlov, Dmitry I. Todorov, Vitaly V. Gursky, Maria G. Samsonova, Alexander M. Samsonov, Diana Clausznitzer, Lars Kaderali, Nikolay A. Kolchanov, Vladimir A. Ivanisenko
[PloS One]
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Exploring Interaction of TNF and Orthopoxviral CrmB Protein by Surface Plasmon Resonance and Free Energy Calculation.
Ivanisenko NV, Tregubchak TV, Saik OV, Ivanisenko VA, Shchelkunov SN
[PROTEIN PEPTIDE LETT]
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Моделирование механизмов регуляции поддержания плюрипотентности эмбриональных стволовых клеток: кинетический и стохастический подходы
Акбердин И.Р.,, Иванисенко Н.В., Казанцев Ф.В., Ощепкова Е.А., Омельянчук Н.А., Матушкин Ю.Г., Афонников Д.А.
[Mathematical Biology & Bioinformatics]
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Предсказание генов маркеров агрессивности глиомы низкой степени злокачественности по экспрессионным данным TCGA
Иванисенко Н.В., Губанова Н.В., Колчанов Н.А., Иванисенко В.А.
[Mathematical Biology & Bioinformatics]
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Структурные и динамические особенности мутантов белка SOD1, ассоциированных с боковым амиотрофическим склерозом
Алемасов Н.А., Иванисенко Н.В., Иванисенко В.А.
[Vavilov journal of genetics and breeding]
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| 2013 |
Computational screening for new inhibitors of M. tuberculosis mycolyltransferases antigen 85 group of proteins as potential drug targets.
Gahoi S, Mandal RS, Ivanisenko N, Shrivastava P, Jain S, Singh AK, Raghunandanan MV, Kanchan S, Taneja B, Mandal C, Ivanisenko VA, Kumar A, Kumar R, Open Source Drug Discovery Consortium, Ramachandran S
[Journal Of Biomolecular Structure & Dynamics]
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Enhanced Differential Evolution Entirely Parallel Method for Biomedical Applications
Konstantin Kozlov, Nikita Ivanisenko, Vladimir Ivanisenko, Nikolay Kolchanov, Maria Samsonova, Alexander M. Samsonov
[Lect Notes Comput Sci]
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Molecular Motion in Frozen Phospholipid Bilayers in the Presence of Sucrose and Sorbitol Studied by the Spin-Echo EPR of Spin Labels
NV Ivanisenko, SA Dzuba
[APPL MAGN RESON]
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PЕПЛИКАЦИЯ CУБГЕНОМНОГО PЕПЛИКОНА ВИPУCА ГЕПАТИТА C В ПPИCУТCТВИИ ИНГИБИТОPОВ NS3-ПPОТЕАЗЫ: CТОXАCТИЧЕCКАЯ МОДЕЛЬ
Н.В. Иваниcенко, Е.Л. Мищенко, И.P. Акбеpдин, П.C. Деменков, В.А. Лиxошвай, К.Н. Козлов, Д.И. Тодоpов, М.Г. Cамcонова, А.М. Cамcонов, Н.А. Колчанов, В.А. Иваниcенко
[МОЛЕКУЛЯРНАЯ БИОФИЗИКА]
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The substitutions G245C and G245D in the Zn(2+)-binding pocket of the p53 protein result in differences of conformational flexibility of the DNA-binding domain.
Pintus SS, Ivanisenko NV, Demenkov PS, Ivanisenko TV, Ramachandran S, Kolchanov NA, Ivanisenko VA.
[Journal Of Biomolecular Structure & Dynamics]
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Молекулярные механизмы взаимодействия белков CrmB вируса оспы коров и вируса натуральной оспы с фактором некроза опухолей человека
Иванисенко Н.В., Трегубчак Т.В., Сайк О.В., Иванисенко В.А., Щелкунов С.Н., Колчанов Н.А.
[Mathematical Biology & Bioinformatics]
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| 2012 |
Low-Temperature Dynamical and Structural Properties of Saturated and Monounsaturated Phospholipid Bilayers Revealed by Raman and Spin-Label EPR Spectroscopy.
N. V. Surovtsev , N. V. Ivanisenko, K. Yu. Kirillov, S. A. Dzuba
[J PHYS CHEM B]
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ПОДАВЛЕНИЕ РЕПЛИКАЦИИ СУБГЕНОМНОГО РНК РЕПЛИКОНА ВИРУСА ГЕПАТИТА С ИНГИБИТОРОМ NS3 ПРОТЕАЗЫ SCH 503034 В HUH-7 КЛЕТКАХ: СТОХАСТИЧЕСКАЯ МОДЕЛЬ
Е.Л. Мищенко, Н.В. Иванисенко, И.Р. Акбердин, П.С. Деменков, В.А. Лихошвай, Н.А. Колчанов, В.А. Иванисенко
[Vavilov journal of genetics and breeding]
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