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Victoria Mironova
Is not an employee of the Institute
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Publications
| 2023 |
DyCeModel: a tool for 1D simulation
for distribution of plant hormones controlling tissue patterning
Азарова Дарья Сергеевна,
Омельянчук Надежда Анатольевна,
Миронова Виктория Владимировна,
Землянская Елена Васильевна,
Лавреха Виктория Вадимовна
[Vavilov journal of genetics and breeding]
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| 2022 |
CisCross: A gene list enrichment analysis to predict upstream regulators in Arabidopsis thaliana
Lavrekha VV, Levitsky VG, Tsukanov AV, Bogomolov AG, Grigorovich DA, Omelyanchuk N, Ubogoeva EV, Zemlyanskaya EV, Mironova V
[Frontiers in Plant Science]
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Motif models proposing independent and interdependent impacts of nucleotides are related to high and low affinity transcription factor binding sites in Arabidopsis
Tsukanov, A. V., Mironova V. V., Levitsky V. G.
[Frontiers in Plant Science]
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| 2021 |
Mechanisms of stress response in the root stem cell niche
Elena V Ubogoeva, Elena V Zemlyanskaya, Jian Xu, Victoria Mironova
[J EXP BOT]
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Meet your MAKR: the membrane-associated kinase regulator protein family in the regulation of plant development
D.D. Novikova, A.L. Korosteleva,V. Mironova,Y. Jaillais
[FEBS J]
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Tissue-specific transcriptome profiling of the Arabidopsis inflorescence stem reveals local cellular signatures
Dongbo Shi, Virginie Jouannet, Javier Agustí, Verena Kaul, Victor Levitsky, Pablo Sanchez, Victoria V Mironova, Thomas Greb
[PLANT CELL]
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Transcriptional regulation in plants: Using omics data to crack the cis-regulatory code
Elena V. Zemlyanskaya, Vladislav A. Dolgikh, Victor G. Levitsky, Victoria Mironova
[CURR OPIN PLANT BIOL]
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| 2020 |
3D analysis of mitosis distribution pattern in the plant root tip with iRoCS Toolbox
Lavrekha V.V., Pasternak T., Palme K., Mironova V.V.
[Plant Stem Cells - Methods and Protocols. Ed: Naseem N. and Dandekar T.]
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Architecture of DNA elements mediating ARF transcription factor binding and auxin-responsive gene expression in Arabidopsis
Alejandra Freire-Rios, Keita Tanaka, Isidro Crespo, Elmar van der Wijk, Yana Sizentsova, Victor Levitsky, Simon Lindhoud, Mattia Fontana, Johannes Hohlbein, D. Roeland Boer, Victoria Mironova, and Dolf Weijers
[P NATL ACAD SCI USA]
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Cell Dynamics in WOX5-Overexpressing Root Tips: The Impact of Local Auxin Biosynthesis
Maria S. Savina,
Taras Pasternak,
Nadya A. Omelyanchuk,
Daria D. Novikova,
Klaus Palme,
Victoria V. Mironova,
Viktoriya V. Lavrekha
[Frontiers in Plant Science]
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Fold-Change-Specific Enrichment Analysis (FSEA): Quantification of Transcriptional Response Magnitude
for Functional Gene Groups
Wiebe D.S., Omelyanchuk N.A., Mukhin A.M., Grosse I., Lashin S.A., Zemlyanskaya E.V., Mironova V.V.
[Genes]
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Meta-Analysis of Transcriptome Data Detected New Potential Players in Response to Dioxin Exposure in Humans
Evgeniya Oshchepkova, Yana Sizentsova, Daniil Wiebe, Victoria Mironova and Nikolay Kolchanov
[INT J MOL SCI]
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PlantLayout – программное средство для моделирования распределения веществ в тканях различной структуры
Савина М.С., Миронова В.В.
[Vavilov journal of genetics and breeding]
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Rocks in the auxin stream:
Wound induced auxin accumulation and ERF115 expression synergistically drive
stem cell regeneration
Canher B., Heyman J., Savina M., Devendran A., Eekhout T., Vercauteren I., Prinsen
E., Matosevich R., Xu J., Mironova V., De Veylder L.
[P NATL ACAD SCI USA]
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Specification and regulation of vascular tissue identity in the Arabidopsis embryo
Margot E. Smit, Cristina I. Llavata-Peris, Mark Roosjen, Henriette van Beijnum, Daria Novikova, Victor Levitsky, Iris Sevilem, Pawel Roszak, Daniel Slane, Gerd Jürgens, Victoria Mironova, Siobhan M. Brady, Dolf Weijers
[DEVELOPMENT]
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metaRE R Package for Meta-Analysis of Transcriptome Data to Identify the
cis-Regulatory Code behind the Transcriptional Reprogramming
Novikova D.D., Cherenkov P.A., Sizentsova Y.G., Mironova V.V.
[Genes]
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Памяти Виталия Александровича Лихошвая: уроки, беседы
и воспоминания
М.С. Савина , Ф.В. Казанцев , К.Д. Безматерных, Д.Н. Штокало, В.В. Миронова, И.Р. Акбердин
[Письма в Вавиловский журнал генетики и селекции]
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| 2019 |
A single ChIP-seq dataset is sufficient for comprehensive
analysis of motifs co-occurrence with MCOT package
Levitsky V., Zemlyanskaya E., Oshchepkov D., Podkolodnaya O., Ignatieva E.,
Grosse I., Mironova V., Merkulova T.
[NUCLEIC ACIDS RES]
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A single-cell view of tissue regeneration in plants
Mironova V. and Xu J.
[CURR OPIN PLANT BIOL]
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Capturing auxin response factors syntax using DNA binding models
Stigliani A, Martin-Arevalillo R, Lucas J, Bessy A, Vinos-Poyo T, Mironova V, Vernoux T, Dumas R, Parcy F
[MOL PLANT]
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Salicylic acid affects root meristem patterning via auxin distribution in a concentration-dependent manner
Taras Pasternak, Edwin P Groot, Fedor Kazantsev, William Teale, Nadya Omelyanchuk, Vasilina Kovrizhnykh, Klaus Palme, Victoria V Mironova
[PLANT PHYSIOL]
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| 2018 |
Deciphering Auxin-Ethylene Crosstalk at a Systems Level
Elena V. Zemlyanskaya, Nadya A. Omelyanchuk, Elena V. Ubogoeva, Victoria V. Mironova
[INT J MOL SCI]
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Diversity of cis-regulatory elements associated with auxin response in Arabidopsis thaliana
Pavel Cherenkov, Daria Novikova, Nadya Omelyanchuk, Victor Levitsky, Ivo Grosse, Dolf Weijers, Victoria Mironova
[J EXP BOT]
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| 2017 |
3D analysis of mitosis distribution highlights the longitudinal zonation and diarch symmetry in proliferation activity of the Arabidopsis thaliana root meristem
Lavrekha V.V., Pasternak T., Ivanov V.B., Palme K., Mironova V.V.
[PLANT J]
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A sacrifice-for-survival mechanism protects Root Stem Cell Niche from Chilling Stress
Jing Han Hong, Maria Savina, Jing Du, Ajay Devendran, Karthikbabu Kannivadi Ramakanth, Xin Tian, Wei Shi Sim, Victoria V. Mironova, and Jian Xu
[CELL]
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Auxin regulates functional gene groups in a fold-change-specific manner in Arabidopsis thaliana roots
N. A. Omelyanchuk, D. S. Wiebe, D. D. Novikova, V. G. Levitsky, N. Klimova, V. Gorelova, C. Weinholdt, G. V. Vasiliev, E. V. Zemlyanskaya, N. A. Kolchanov, A. V. Kochetov, I. Grosse, V. V. Mironova
[SCI REP-UK]
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The Interplay of Chromatin Landscape and DNA-Binding Context Suggests Distinct Modes of EIN3 Regulation in Arabidopsis thaliana
Zemlyanskaya EV, Levitsky VG, Oshchepkov DY, Grosse I, Mironova VV
[Frontiers in Plant Science]
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The systems biology of auxin in developing embryos.
V. Mironova, W. Teale, M. Shahriari, J. Dawson, K. Palme.
[TRENDS PLANT SCI]
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| 2016 |
A detailed expression map of the PIN1 auxin transporter in Arabidopsis thaliana root
N.A. Omelyanchuk, V.V. Kovrizhnykh, E.A. Oshchepkova, T. Pasternak, K. Palme, V.V. Mironova.
[BMC PLANT BIOL]
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Meta-analysis of transcriptome data identified TGTCNN motif variants associated with the response to plant hormone auxin in Arabidopsis thaliana L.
Zemlyanskaya EV, Wiebe DS, Omelyanchuk NA, Levitsky VG, Mironova VV.
[Journal of Bioinformatics and Computational Biology]
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Механизмы регуляции передачи этиленового сигнала у растений
Землянская Е.В., Омельянчук Н.А., Ермаков А.А., Миронова В.В.
[Vavilov journal of genetics and breeding]
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| 2015 |
On the distribution of auxin concentrations in root horizontal layer cells.
Novoselova E.S., Mironova V.V., Khlebodarova T.M., Likhoshvai V.A.
[Russian Journal of Genetics: Applied Research]
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| 2014 |
Computational analysis of auxin responsive elements in the Arabidopsis thaliana L. genome
Mironova VV, Omelyanchuk NA, Wiebe DS, Levitsky VG
[BMC GENOMICS]
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КЛЮЧЕВАЯ РОЛЬ PIN-БЕЛКОВ В ТРАНСПОРТЕ АУКСИНА В КОРНЕ ARABIDOPSIS THALIANA L.
В.В. Коврижных, Н.А. Омельянчук, Т.П. Пастернак, В.В. Миронова
[Vavilov journal of genetics and breeding]
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Математическая модель регуляции фитогормонами формирования меристематической зоны корня
Лавреха В.В., Омельянчук Н.А., Миронова В.В.
[Vavilov journal of genetics and breeding]
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О распределениях концентраций ауксина в клетках горизонтального слоя корня
Новоселова Е.С., Миронова В.В., Хлебодарова Т.М., Лихошвай В.А.
[Vavilov journal of genetics and breeding]
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Системная биология
Д.А. Афонников, В.В. Миронова
[Vavilov journal of genetics and breeding]
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| 2013 |
Deformable Cell Model and its Application to Growth of Plant Meristem
N. Bessonov, V. Mironova, V. Volpert
[MATH MODEL NAT PHENO]
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How multiple auxin responsive elements may interact in plant promoters: a reverse problem solution
Mironova V.V., Omelyanchuk N.A., Savina M.S., Ponomarenko P.M., Ponomarenko M.P., Likhoshvai V.A., Kolchanov N.A.
[Journal of Bioinformatics and Computational Biology]
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MATHEMATICAL MODELING OF AUXIN TRANSPORT IN PROTOXYLEM AND PROTOPHLOEM OF ARABIDOPSIS THALIANA ROOT TIPS
Novoselova ES, Mironova VV, Omelyanchuk NA, Kazantsev FV, Likhoshvai VA
[Journal of Bioinformatics and Computational Biology]
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Исследование математической модели перераспределения вещества в кольцевом ансамбле клеток
С. И. Фадеев, В. В. Когай, В. В. Миронова, Н. А. Омельянчук, В. А. Лихошвай
[Сибирский журнал вычислительной математики]
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| 2012 |
Combined in silico/in vivo analysis of mechanisms providing for root apical meristem self-organization and maintenance
Mironova VV, Omelyanchuk NA, Novoselova ES, Doroshkov AV, Kazantsev FV, Kochetov AV, Kolchanov NA, Mjolsness E, Likhoshvai VA.
[ANN BOT-LONDON]
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| 2011 |
From published expression and phenotype data to structured knowledge: The Arabidopsis gene net supplementary database and its applications
Denis Ponomaryov, Nadezhda Omelianchuk, Victoria Mironova, Evgeny Zalevsky, Nikolay Podkolodny, Eric Mjolsness, and Nikolay Kolchanov
[Lecture Notes in Artificial Intelligence]
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| 2010 |
A plausible mechanism for auxin patterning along the developing root
Mironova V.V., Omelyanchuk N.A., Yosiphon G, Fadeev S.I., Kolchanov N.A., Mjolsness E., Likhoshvai V.A.
[BMC SYST BIOL]
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Математическое моделирование распределения ауксина в проводящих тканях Arabidopsis thaliana
2. E.C. Новоселова, В.В. Миронова
[Труды ТГУ. Серия: Биологическая]
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Эффективность связывания TBP c промотором ARF-генов растений коррелирует с характером влияния ARF белков на транскрипцию (активатор/репрессор)
В.В. Миронова, Н.А. Омельянчук, П.М. Пономаренко, М.П. Пономаренко, Н.А. Колчанов
[Doklady Biochemistry and Biophysics]
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| 2009 |
Генетика развития растений: интеграция информации из различных наблюдений и экспериментов в базах данных
Омельячук НА., Миронова ВВ., Колчанов НА
[RUSS J GENET+]
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Моделирование регуляции ауксином инициации латеральных органов у Arabidopsis thaliana
В.А. Лихошвай, Н.А. Омельянчук, В.В. Миронова, Ф.В. Казанцев, И.Р. Акбердин, В.К. Королев, С.И. Фадеев, Н.А. Колчанов
[Информационный вестник ВОГИС]
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| 2008 |
Математическое моделирование морфогенеза растений
Г.Г. Лазарева, В.В. Миронова, Н.А. Омельянчук, И.В. Шваб, В.А. Вшивков, Д.Н. Горпинченко, С.В. Николаев, Н.А.Колчанов.
[Журнал вычислительной математики и математической физики]
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| 2007 |
А cellular automaton to model the development of primary shoot meristems of Arabidopsis Thaliana
Ilya Akberdin, Evgeniy Ozonov, Victoria Mironova, Nadezda Omelyanchuk, Vitaly Likhoshvai, Dmytry Gorpinchenko, Nikolay Kolchanov
[Journal of Bioinformatics and Computational Biology]
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Математическая модель паттерна распределения ауксина в корне растения
Лихошвай В. А., Омельянчук Н. А., Миронова В. В., Фадеев С. И., Мелснесс Э. М., Колчанов Н. А.
[RUSS J DEV BIOL+]
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| 2006 |
A model of Arabidopsis thaliana morphogenesis in cellular automaton terms
I. R. Akberdin, E. A. Ozonov, V.V. Mironova, D. N. Gorpinchenko,N. A. Omelyanchuk, V. A. Likhoshvai, N. A. Kolchanov
[BIOPHYSICS]
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Моделирование морфогенеза Arabidopsis thaliana в терминах клеточного автомата
Акбердин И. Р., Озонов Е. А., Миронова В. В., Горпинченко Д.Н., Омельянчук Н. А., Лихошвай В. А., Колчанов Н.А.
[BIOPHYSICS]
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Системный подход к исследованию морфогенеза Arabidopsis Thaliana: I. База данных AGNS
Омельянчук Н.А., Миронова В.В., Залевский Е.М., Шамов И.С.,Поплавский А.С., Подколодный Н.Л., Пономарев Д.К., Николаев С.В., Мелснесс Э.Д., Мейеровитц Е.M., Колчанов Н.А.
[BIOPHYSICS]
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Системный подход к исследованию морфогенеза Arabidopsis Thaliana: II. Моделирование регуляции структуры апикальной меристемы побега
Николаев С.В., Фадеев С.И., Пененко A.В., Лавреха В.В., Миронова В.В., Омельянчук Н.А., Мелснесс Э.Д., Колчанов Н.А.
[BIOPHYSICS]
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