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Personal information
Babenko V.N. Graduated from Novosibirsk State University in 1985 with a degree in Mathematics, Applied Mathematics. After defending his Ph.D. thesis since 1993, Babenko V.N. the post of senior researcher In 2000 V.N. Babenko worked in Cape Town, South Africa at the University of the Western Cape (UWC) from 1999 to 2001 to analyze alternative splicing in mass sequencing data (ESTs) in STACK database. From 2001 to 2003 V.N. Babenko was invited to the University of Pennsylvania, USA, to work on a high-throughput sequencing data annotation project (DoTs). From 2003 to 2006, VN Babenko worked as a researcher in the laboratory of the National Institute of Health in the United States on the topic "study of the evolution of the exon-intron structure of eukaryotic genes." V.N. Babenko currently works at the Institute of Cytology and Genetics SB RAS, is a specialist in computer genomics, bioinformatics and human genetics. Babenko V.N. is the author of over 100 scientific publications. He was the winner of scientific research competitions, a participant in grants from the Russian Foundation for Basic Research and the Russian Science Foundation. Babenko V.N. defended his Ph.D. thesis "Research of criteria for testing the Hardy-Weinberg distribution" in biology in 1992. His research interests include computer genomics, genetics, analysis of the evolution of the exon-intron structure of eukaryotic genes. Overall scientific experience is over 30 years. Babenko V.N. conducts active teaching work (lectures) on the structure of the eukaryotic genome, is a consultant on mathematical data processing for NSU students.
Publications
| 2024 |
Brain-Region-Specific Genes Form the Major Pathways Featuring Their Basic Functional Role: Their Implication in Animal Chronic Stress Model.
Babenko V., Redina O., Smagin D., Kovalenko I., Galyamina A., Kudryavtseva N.
[INT J MOL SCI]
|
| 2023 |
Effects of Positive Fighting Experience and Its Subsequent Deprivation on the Expression Profile of Mouse Hippocampal Genes Associated with Neurogenesis
Redina O.E., Babenko V.N., Smagin D.A., Kovalenko I.L., Galyamina A.G., Efimov V.M., Kudryavtseva N.N.
[INT J MOL SCI]
|
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Elucidation of the Landscape of Alternatively Spliced Genes and Features in the Dorsal Striatum of Aggressive/Aggression-Deprived Mice in the Model of Chronic Social Conflicts.
Babenko, V. Redina, O. Smagin, D. Kovalenko, I. Galyamina, A. Kudryavtseva, N.
[Genes]
|
| 2022 |
Advances of Brain Transcriptomics.
Redina OE, Babenko VN.
[Genes]
|
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Dorsal Striatum Transcriptome Profile Profound Shift in Repeated Aggression Mouse Model Converged to Networks of 12 Transcription Factors after Fighting Deprivation
Vladimir Babenko, Olga Redina, Dmitry Smagin, Irina Kovalenko, Anna Galyamina, Roman Babenko, Natalia Kudryavtseva
[Genes]
|
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LPS Administration Impacts Glial Immune Programs by Alternative Splicing
Vladimir N. Babenko
Galina T. Shishkina
Dmitriy A. Lanshakov
Ekaterina V. Sukhareva
Nikolay N. Dygalo
[Biomolecules]
|
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The Dysfunction of Carcinogenesis- and Apoptosis-Associated Genes that Develops in the Hypothalamus
under Chronic Social Defeat Stress in Male Mice
Anna G. Galyamina, Dmitry A. Smagin, Irina L. Kovalenko,
Olga E. Redina, Vladimir N. Babenko, and Natalia N. Kudryavtseva
[Biochemistry (Moscow). Suppl B.]
|
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The Dysfunction of Carcinogenesis- and Apoptosis-Associated Genes that Develops in the Hypothalamus under Chronic Social Defeat Stress in Male Mice
A.G. Galyamina, D.A. Smagin, I.L. Kovalenko, O.E. Redina, V.N. Babenko, N.N. Kudryavtseva
[BIOCHEMISTRY-MOSCOW+]
|
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Дисфункция генов, ассоциируемых с канцерогенезом и апоптозом, развивающаяся в гипоталамусе самцов мышей под влиянием хронического социального стресса
Галямина А.Г., Смагин Д.А., Коваленко И.Л., Редина О.Е., Бабенко В.Н., Кудрявцева Н.Н.
[Биохимия]
|
| 2021 |
Autophagy genes expression profiling in secondary glioblastoma cells transcriptome
Gubanova N., Bragin A., Vasiliev G., Babenko V., Ponomarenko M., Orlov Y.
[Cell Death Discovery]
|
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Fitness Analysis and Transcriptome Profiling Following Repeated Mild Heat Stress of Varying Frequency in Drosophila melanogaster Females
Gruntenko NE, Karpova EK, Babenko VN, Vasiliev GV, Andreenkova OV, Bobrovskikh MA, Menshanov PN, Babenko RO, Rauschenbach IY.
[Biology]
|
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Correlation of expression changes between genes controlling 5-HT synthesis and genes Crh and Trh in the midbrain raphe nuclei of chronically aggressive and defeated male mice.
Redina, O., Babenko, V., Smagin, D., Kovalenko, I., Galyamina, A., Kudryavtseva N.
[Genes]
|
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Identifying the involvement of pro-inflammatory signal in hippocampal gene expression changes after experimental ischemia: transcriptome-wide analysis
Shishkina GT, Gulyaeva NV, Lanshakov DA, Kalinina TS, Onufriev MV, Moiseeva YV, Sukhareva EV, Babenko VN, Dygalo NN.
[Biomedicines]
|
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Reduced expression of Slc genes in the VTA and NAcc of male mice with positive fighting experience
Smagin D.A., Babenko V.N., Redina O.E., Kovalenko I.L., Galyamina A.G., Kudryavtseva N.N.
[Genes]
|
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АССОЦИАЦИЯ МЕЖДУ ЭВОЛЮЦИОННОЙ КОНСЕРВАТИВНОСТЬЮ
ДЛИННЫХ НЕКОДИРУЮЩИХ РНК И ПРИСУТСТВИЕМ
CPG-ОСТРОВОВ
Сидоренко ИА, Рогозин ИБ, Бабенко ВН
[Успехи современной биологии]
|
| 2020 |
Analyzing a putative enhancer of optic disc morphology
Babenko V
Babenko O
Orlov Yu
[BMC GENET]
|
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Differentially Expressed Genes of the Slc6a Family as Markers of Altered Brain Neurotransmitter System Function in Pathological States in Mice
Babenko V. N., Smagin D. A., Kovalenko I. L., Galyamina A. G., Kudryavtseva N. N.
[Neuroscience Behavioral Physiology]
|
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Dopamine response gene pathways in dorsal striatum MSNs from a gene expression viewpoint: cAMP‑mediated gene networks
Babenko V.N., Galyamina A.G., Rogozin I.B., Smagin D. A., Kudryavtseva N.N.
[BMC NEUROSCI]
|
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Gene Expression Changes in the Ventral Tegmental
Area of Male Mice with Alternative Social Behavior
Experience in Chronic Agonistic Interactions
Olga Redina, Vladimir Babenko, Dmitry Smagin, Irina Kovalenko, Anna Galyamina, Vadim Efimov and Natalia Kudryavtseva
[INT J MOL SCI]
|
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Recombination Events in Leishmania donovani: Mining Population Data
Rogozin IB, Charyyeva A, Sidorenko IA, Babenko VN, Yurchenko V
[Pathogens and Disease]
|
| 2019 |
Aberrant Expression of Collagen Gene Family in the Brain Regions of Male Mice with Behavioral Psychopathologies Induced by Chronic Agonistic Interactions
Smagin DA, Galyamina AG, Kovalenko IL, Babenko VN, Kudryavtseva NN
[Biomed Res Int]
|
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Evolution of Exons and the Exon–Intron Structure of Long
Intergenic Noncoding RNA Genes in Placental Mammals
Sidorenko IA, Rogozin IB, Babenko VN
[Biology Bulletin Reviews]
|
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FTO haplotyping underlines high obesity risk for European populations
Babenko VN, Babenko RO, Gamieldien G, Markel AL
[BMC MED GENOMICS]
|
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Nucleotide Weight Matrices Reveal Ubiquitous Mutational Footprints of AID/APOBEC Deaminases in Human Cancer Genomes.
Rogozin IB, Roche-Lima A, Lada AG, Belinky F, Sidorenko IA, Glazko GV, Babenko VN, Cooper DN, Pavlov YI
[CANCER-AM CANCER SOC]
|
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Volatile Evolution of Long Non-Coding RNA Repertoire in Retinal Pigment Epithelium: Insights from Comparison of Bovine and Human RNA Expression Profiles.
Postnikova OA, Rogozin IB, Samuel W, Nudelman G, Babenko VN, Poliakov E, Redmond TM
[Genes]
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Дифференциально экспрессирующиеся гены семейства Slc6a как маркеры измененной функции нейромедиаторных систем мозга при патологических состояниях у мышей
В. Н. Бабенко, Д. А. Смагин, И. Л. Коваленко,
А. Г. Галямина, Н. Н. Кудрявцева
[Журнал высшей нервной деятельности]
|
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ЭВОЛЮЦИЯ ЭКЗОНОВ И ЭКЗОН-ИНТРОННОЙ СТРУКТУРЫ ГЕНОВ ДЛИННЫХ МЕЖГЕННЫХ НЕКОДИРУЮЩИХ РНК У ПЛАЦЕНТАРНЫХ МЛЕКОПИТАЮЩИХ
Сидоренко ИА, Рогозин ИБ, Бабенко ВН
[Успехи современной биологии]
|
| 2018 |
CpG islands’ clustering uncovers early development genes in the human genome
Babenko V.N. , Bogomolov A.G., Babenko R.O., Galieva E.R., Orlov Y.L.
[COMPUT SCI INF SYST]
|
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Aberrant expression of collagen family genes in the brain regions developing under agonistic interactions in male mice: RNA-Seq data
Smagin D.A., Galyamina A.G., Kovalenko I.L., Babenko V.N. Kudryavtseva N.N.
[Cold Spring Harbor Laboratory, BioRxive]
|
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Abnormal social behaviors and dysfunction of autism-related genes associated with daily agonistic interactions in mice
Kudryavtseva N.N., Kovalenko I.L., Smagin D.A., Galyamina A.G., Babenko V.N.
[ELSEVIER/ San Diego: Academic Press]
|
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Altered Slc25 family gene expression as markers of mitochondrial dysfunction in brain regions under experimental mixed anxiety/depression-like disorder.
Babenko VN, Smagin DA, Galyamina AG, Kovalenko IL, Kudryavtseva NN
[BMC NEUROSCI]
|
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Haplotype analysis of Apoe SNPs in ADNI dataset.
Babenko VN, Afonnikov DA, Ignatieva EV, Klimov AV, Gusev FE, Rogaev EI
[BMC NEUROSCI]
|
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Heterogeneity of brain ribosomal genes expression following repeated experience of aggression in male mice as revealed by RNA-Seq
Smagin D.A., Kovalenko I.L., Galyamina A.G., Orlov Yu.L., Babenko V.N., Kudryavtseva N.N.
[MOL NEUROBIOL]
|
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Maternal genetic features of the Iron Age Tagar population from Southern Siberia (1st millennium BC)
Aleksandr S. Pilipenko, Rostislav O. Trapezov, Stepan V. Cherdantsev, Vladimir N. Babenko, Marina S. Nesterova, Dmitri V. Pozdnyakov, Vyacheslav I. Molodin, Natalia V. Polosmak
[PloS One]
|
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Mitochondrial DNA diversity in a Transbaikalian Xiongnu population
Aleksandr S. Pilipenko, Stepan V. Cherdantsev, Rostislav O. Trapezov, Anton A. Zhuravlev, Vladimir N. Babenko, Dmitri V. Pozdnyakov, Prokopiy B. Konovalov, Natalia V. Polosmak
[Archaeological and Anthropological Sciences]
|
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Neurogenomics of repeated aggression and autistic spectrum disorders: New direction in the experimental study of social behavior.
Kudryavtseva N.N., Kovalenko I.L., Smagin D.A., Galyamina A.G., Babenko V.N.
[The Bulletin of the International Society for Research on Aggression]
|
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Purifying and positive selection in the evolution of stop codons.
Belinky F, Babenko VN, Rogozin IB, Koonin EV
[SCI REP-UK]
|
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Дифференциально экспрессирующиеся гены нейромедиаторных систем в дорсальном стриатуме самцов мышей с двигательными нарушениями
Смагин Д.А., Галямина А.Г., Коваленко И.Л., Бабенко В.Н., Тамкович Н.В., Борисов С.А., Толстикова Т.Г., Кудрявцева Н.Н.
[Журнал высшей нервной деятельности]
|
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Компьютерная база данных для анализа дифференциально экспрессирующихся генов, связанных с агрессивным поведением, на моделях лабораторных животных
Анатолий Олегович Брагин, Кирилл Александрович Табанюхов, Ирина Витальевна Чадаева, Антон Витальевич Цуканов, Роман Олегович Бабенко, Ирина Вадимовна Медведева, Антон Геннадьевич Богомолов, Владимир Николаевич Бабенко, Юрий Львович Орлов
[Вестник НГУ. Серия: Информационные технологии]
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Компьютерный анализ альтернативного сплайсинга генов в культурах клеток глиом по данным RNA-seq
С. С. Ковалев, Е. Ю. Леберфарб, Н. В. Губанова, А. О. Брагин, А. Г. Галиева,А. В. Цуканов, В. Н. Бабенко, Ю. Л. Орлов
[Вестник НГУ. Серия: Информационные технологии]
|
| 2017 |
Abnormality of social behavior and dysfunction of autism related gene expression developing under chronic social defeat stress in male mice.
Kudryavtseva N.N., Kovalenko I.L., Smagin D.A., Galyamina A.G., Babenko V.N.
[EUR NEUROPSYCHOPHARM]
|
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Computer Analysis of Glioma Transcriptome Profiling: Alternative Splicing Events
Babenko V.N., Gubanova N.V., Bragin A.O, Chadaeva I.V., Vasiliev G.V., Medvedeva I.V., Gaytan A.S., Krivoshapkin A.L., Orlov Yu.L.
[J INTEGR BIOINFORM]
|
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Genomic landscape of CpG rich elements in human genome
Babenko V.N., Chadaeva I.V., Orlov Y.L.
[BMC EVOL BIOL]
|
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RNA-Seq Mouse Brain Regions Expression Data Analysis: Focus on ApoE Functional Network.
BAbenko VN, Smagin DA, Kudryavtseva NN
[J INTEGR BIOINFORM]
|
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Serotonergic genes in the development of anxiety/depression-like state and pathology of aggressive behavior in male mice: RNA-seq data.
Kudryavtseva N.N., Smagin D.A., Kovalenko I.L., Galyamina A.G., Vishnivetskaya G.B., Babenko V.N., Orlov Yu.L
[Molecular Biology]
|
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Альтернативный сплайсинг в отделах головного мозга селектированных по агрессивности крыс
В. Н. Бабенко, А. О. Брагин, И. В. Чадаева, А. Л. Маркель, Ю. Л. Орлов
[Molecular Biology]
|
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Дифференциальная экспрессия и альтернативный сплайсинг в культурах клеток глиом по данным RNA-seq
Губанова Н.В., Брагин А.О., Бабенко В.Н., Гайтан А.С., Кривошапкин А.Л., Орлов Ю.Л.
[Acta Naturae]
|
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Программа анализа геномного распределения хромосомных контактов в ядре клетки, по данным полученным по технологиям ChIA-PET и Hi-C
Кулакова Е.В., Спицина А.М., Богомолов А.Г., Орлова Н.Г., Дергилев А.И., Чадаева И.В., Бабенко В.Н., Орлов Ю.Л.
[Программные системы: теория и приложения]
|
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Серотонергические гены в развитии тревожно/депрессивного расстройства и патологии агрессивного поведения у самцов мышей: Данные RNA-seq
Кудрявцева Н.Н., Смагин Д.А., Коваленко И.Л., Галямина А.Г., Вишнивецкая Г.Б., Бабенко В.Н., Орлов Ю.Л.
[Molecular Biology]
|
| 2016 |
Analysis of differential gene expression by RNA-seq data in brain areas of laboratory animals
Babenko V.N., Bragin A.O., Spitsina A.M., Chadaeva I.V., Galieva E.R., Orlova G.V., Medvedeva I.V., Orlov Y.L.
[J INTEGR BIOINFORM]
|
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Association of IL28B and IL10 gene polymorphism with predisposition to tick-borne encephalitis in a Russian population
Barkhash A.V., Babenko V.N., Voevoda M.I., Romaschenko A.G.
[TICKS TICK-BORNE DIS]
|
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Haplotype analysis of the HFE gene among populations of Northern Eurasia, in patients with metabolic disorders or stomach cancer, and in long-lived people
Mikhailova SV, Babenko VN, Ivanoshchuk DE, Gubina MA, Maksimov VN, Solovjova IG, Voevoda MI.
[BMC GENET]
|
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The Dynamics of the Composition of mtDNA Haplotypes of the Ancient Population of the Altai Mountains from the Early Bronze Age (3rd Millennium BC) to the Iron Age (2nd-1st Centuries BC)
Gubina MA, Kulikov IV, Babenko VN, Chikisheva TA, Romaschenko AG, Voevoda MI, Molodin VI.
[GENETICA]
|
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Transcriptome profiles of gene expression in brain of male mice with repeated experience of aggression as revealed by RNA-Seq
Kudryavtseva N.N., Smagin D.A., Kovalenko I.L., Galyamina A.G., Orlov Y.L., Babenko V.N.
[EUR NEUROPSYCHOPHARM]
|
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[Gene Polymorphism of the c-fms, ITGB3,CCR2, and DBH genes in the populations of old believers of the Tyumen oblast and Russian residents of Novosibirsk].
Gubina MA, Babenko VN, Ivanoshchuk DE, Shuryaeva AK, Latieva OO, Solov'eva IG, Ponomareva MN, Konovalova NA, Maksimov VN, Voevoda MI.
[Molecular Biology]
|
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Полиморфизм генов CD209 и TLR3 в популяциях Северной Евразии
Бархаш А.В., Бабенко В.Н., Воевода М.И., Ромащенко А.Г.
[RUSS J GENET+]
|
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Эволюция CpG-островов путем тандемных дупликаций
Бабенко В.Н., Орлов Ю.Л., Исакова Ж.И., Антонов Д.А., Воевода М.И.
[Vavilov journal of genetics and breeding]
|
| 2015 |
117 Analysis of SNP containing sites in human genome using text complexity estimates
Nataly S. Safronova, Vladimir N. Babenko, Yuriy L. Orlov
[Journal Of Biomolecular Structure & Dynamics]
|
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19 Implication of transposons distribution on chromatin state and genome architecture in human
Vladimir N. Babenko, Vladimir F. Matvienko, Nataly S. Safronova
[Journal Of Biomolecular Structure & Dynamics]
|
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Полиморфизм гена TRPM8 в кыргызской популяции:возможная связь с высокогорной адаптацией.
Бабенко ВН., Исакова ЖТ., Талайбекова ЭТ., Асамбаева ДА., Кобзев ВФ., Потапова ТА., Воевода МИ., Алдашев АА.
[Vavilov journal of genetics and breeding]
|
| 2014 |
Genetic Organization of Interphase Chromosome Bands and Interbands in Drosophila melanogaster.
Zhimulev IF, Zykova TY, Goncharov FP, Khoroshko VA, Demakova OV, Semeshin VF, Pokholkova GV, Boldyreva LV, Demidova DS, Babenko VN, Demakov SA, Belyaeva ES.
[PloS One]
|
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The roles of the monomer length and nucleotide context of plant tandem repeats in nucleosome positioning
Levitsky VG, Babenko VN, Vershinin AV
[Journal Of Biomolecular Structure & Dynamics]
|
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Анализ аутосомных микросателлитных ДНК-локусов в геноме кыргызов.
Исакова ЖТ, Бабенко ВН, Асамбаева ДА, Талайбекова ЭТ, Алдашев АА
[Доклады нациаональной академии наук Кыргызской Распублики]
|
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Ассоциация полиморфизмов TRPM8 с липидами крови и антропометрическими показателями в русской популяции.
Potapova TA, Babenko VN, Kobzev VF, Romashchenko AG, Maksimov VN, Voevoda MI.
[B EXP BIOL MED+]
|
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ПОЛНОГЕНОМНЫЙ АНАЛИЗ ПУЛИРОВАННЫХ ВЫБОРОК ДНК КОГОРТ ЧЕЛОВЕКА
В.Н. Бабенко, В.Н. Максимов, Е.В. Кулакова, Н.С. Сафронова, М.И. Воевода, Е.И. Рогаев
[Vavilov journal of genetics and breeding]
|
| 2013 |
Adult Opisthorchis felineus major protein fractions deduced from transcripts: Comparison with liver flukes Opisthorchis viverrini and Clonorchis sinensis.
Pomaznoy M., Tatkov S., Katokhin A., Afonnikov D., Babenko V., Furman D., Brusentsov I., Belavin P., Najakshin A., Guselnikov S., Vasiliev G., Sivkov A., Prokhortchouk E., Skryabin K., Mordvinov V.
[EXP PARASITOL]
|
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Гаплотипическое разнообразие мтДНК и У-хромосомы в популяциях Алтай- Саянского района
Губина МА, Дамба ЛВ, Бабенко ВН, Ромащенко АГ, Воевода МИ
[RUSS J GENET+]
|
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ПОЛИМОРФИЗМ МИТОХОНДРИАЛЬНОЙ ДНК В ПОПУЛЯЦИЯХ КОРЕННЫХ ЖИТЕЛЕЙ ДАЛЬНЕГО ВОСТОКА
М. А. Губина, Л. А. Гырголькау, В. Н. Бабенко, Л. Д. Дамба, В. Н. Максимов, М. И. Воевода
[RUSS J GENET+]
|
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Эффект суппрессии P-элементов с маркерным геном mini-white в межгенных районах DROSOPHILA MELANOGASTER
Бабенко В.Н., Матвиенко В. ф.
[Цитология]
|
| 2012 |
Drosophila melanogaster Genome: Correlation of Chromatin State with Splicing and Transcription Regulation
Babenko VN, Matvienko VF, Zykov IA
[Russian Journal of Genetics: Applied Research]
|
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Nucleosome Organization in Plant DNA Satellite Sequences
Babenko VN, Kutashev KO, Matvienko VF
[Russian Journal of Genetics: Applied Research]
|
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Single nucleotide polymorphism in the promoter region of the CD209 gene is associated with human predisposition to severe forms of tick-borne encephalitis
Barkhash A.V., Perelygin A.A., Babenko V.N., Brinton M.A., Voevoda M.I.
[ANTIVIR RES]
|
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НУКЛЕОСОМНАЯ ОРГАНИЗАЦИЯ В САТЕЛЛИТНЫХ ПОСЛЕДОВАТЕЛЬНОСТЯХ ДНК РАСТЕНИЙ
В.Н. Бабенко К.О. Куташев В.Ф. Матвиенко
[Vavilov journal of genetics and breeding]
|
| 2011 |
A method for generating selective DNA probes for the analysis of C-negative regions in human chromosomes.
Morozkin ES, Loseva EM, Karamysheva TV, Babenko VN, Laktionov PP, Vlassov VV, Rubtsov NB.
[CYTOGENET GENOME RES]
|
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Identical Functional Organization of Nonpolytene and Polytene Chromosomes in Drosophila melanogaster.
Vatolina TY, Boldyreva LV, Demakova OV, Demakov SA, Kokoza EB, Semeshin VF, Babenko VN, Goncharov FP, Belyaeva ES, Zhimulev IF.
[PloS One]
|
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Identification and molecular genetic characterization of the polytene chromosome interbands in Drosophila melanogaster
Vatolina TIu, Demakov SA, Semeshin VF, Makunin IV, Babenko VN, Beliaeva ES, Zhimulev IF.
[RUSS J GENET+]
|
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Linkage and association analyses of glaucoma related traits in a large pedigree from a Dutch genetically isolated population
Axenovich T, Zorkoltseva I, Belonogova N, van Koolwijk L, Borodin P, Kirichenko A, Babenko V, Ramdas W, Amin N, Despriet D, Vingerling J, Lemij H, Oostra BA, Klaver C, Aulchenko Y, van Duijn C.
[J MED GENET]
|
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Protein composition of interband regions in polytene and cell line chromosomes of Drosophila melanogaster.
Demakov SA, Vatolina TY, Babenko VN, Semeshin VF, Belyaeva ES, Zhimulev IF.
[BMC GENOMICS]
|
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Геном Drosophila melanogaster: cвязь состояния хроматина с регуляцией сплайсинга и транскрипции
Бабенко ВН, Матвиенко ВФ, Зыков ИА
[Vavilov journal of genetics and breeding]
|
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Полиморфизм гена HFE у населения Северной Азии
Михайлова С.В., Ромащенко А.Г., Бабенко В.Н., Губина М.А., Соболева Д.Е., Кобзев В.Ф., Воевода М.И
[Вестник РАМН]
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| 2010 |
Does drive toward canonic exonic splicing sites exist in mammals
Babenko V, Ward W, Ruvinsky A
[J MOL EVOL]
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Gene density profile reveals the marking of late replicated domains in the Drosophila melanogaster genome
Belyakin SN, Babenko VN, Maksimov DA, Shloma VV, Kvon EZ, Belyaeva ES, Zhimulev IF.
[CHROMOSOME RES]
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Paucity and preferential suppression of transgenes in late replication domains of the D. melanogaster genome
Babenko V.N., Makunin I.V., Brusentsova I.V., Belyaeva E.S., Maksimov D.A., Belyakin S.N., Maroy P., Vasil’eva L.A., Zhimulev I.F.
[BMC GENOMICS]
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The ethnospecific distribution of the HFE haplotypes for IVS2(+4)t/c, IVS(-44)t/c, and IVS5(-47)g/a in populations of Russia and possible effects of these single-nucleotide polymorphisms in splicing
Mikhailova S.V., Babenko V.N., Voevoda M.I., Romashchenko A.G.
[GENET TEST]
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Variability in the 2'-5'-oligoadenylate synthetase gene cluster is associated with human predisposition to tick-borne encephalitis virus-induced disease
Barkhash A.V., Perelygin A.A., Babenko V.N., Myasnikova N.G., Pilipenko P.I., Romaschenko A.G., Voevoda M.I., Brinton M.A.
[J INFECT DIS]
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Интеркалярный хроматин в геноме Drosophila
Жимулев ИФ, Беляева ЕС, Андреева ИС, Андреенкова АВ, Бабенко ВН, Белякин СН, Болдырева ЛС, Брусенцова ИС, Демаков СН, Зыков ИА, Кокоза ЕП, Колесникова ТН, Максимов ДН, Макунин ИВ, Пиндюрин АВ, Семешин ВФ, Хорошко ВА
[RUSS J GENET+]
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Ландшафт альтернативного сплайсинга в геноме Drosophila melanogaster
Бабенко В.Н., Айтназаров Р.Б., Гончаров Ф.В., Жимулев И.Ф.
[RUSS J GENET+]
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Полиморфизм генов 2'-5'-олигоаденилатсинтетаз (OAS) человека, связанный с предрасположенностью к тяжелым формам клещевого энцефалита, в популяциях Северной Евразии
Бархаш А.В., Бабенко В.Н., Кобзев В.Ф., Ромащенко А.Г., Воевода М.И.
[Molecular Biology]
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| 2009 |
Характеристика молекулярно-генетической организации интеркалярного гетерохроматина в районе 10А-В D. melanogaster
Бабенко ВН, Похолкова ГС, Кокоза ЕВ, Андреенкова НС, Белякин СН, Беляева ЕС, Жимулев ИФ
[Doklady Biochemistry and Biophysics]
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| 2008 |
Оценка потенциальной функциональной значимости полиморфизмов IVS2(+4) t/c, IVS4(-44) t/c и IVS5(-47) a/g гена HFE, ассоциированного с наследственным гемохроматозом человека
Михайлова С.В., Бабенко В.Н., Максимов В.Н., Воевода М.И., Кобзев В.Ф., Ромащенко А.Г.
[Mathematical Biology & Bioinformatics]
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Полиморфизм холодового рецептора TPRM8 в этнических группах Сибири и Дальнего Востока
Потапова ТА, Юдин НС, Бабенко ВН, Пилипенко ИВ, Кобзев ВФ, Гырголькау ЛА, Воевода МИ
[Информационный вестник ВОГИС]
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| 2007 |
Long-term trends in evolution of indels in protein sequences
Wolf Y, Madej T, Babenko V, Shoemaker B, Panchenko AR.
[BMC EVOL BIOL]
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| 2006 |
Signs of positive selection of somatic mutations in human cancers detected by EST sequence analysis
Babenko VN, Basu MK, Kondrashov FA, Rogozin IB, Koonin EV.
[BMC CANCER]
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| 2005 |
Analysis of evolution of exon-intron structure of eukaryotic genes
Rogozin IB, Sverdlov AV, Babenko VN, Koonin EV
[BRIEF BIOINFORM]
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Conservation versus parallel gains in intron evolution
Sverdlov AV, Rogozin IB, Babenko VN, Koonin EV
[NUCLEIC ACIDS RES]
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| 2004 |
Comparative analysis of complete genomes reveals gene loss, acquisition and acceleration of evolutionary rates in Metazoa, suggests a prevalence of evolution via gene acquisition and indicates that the evolutionary rates in animals tend to be conserved.
Babenko VN, Krylov DM
[NUCLEIC ACIDS RES]
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Preferential loss and gain of introns in 3' portions of genes suggests a reverse-transcription mechanism of intron insertion
Sverdlov AV, Babenko VN, Rogozin IB, Koonin EV
[GENE]
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Prevalence of intron gain over intron loss in the evolution of paralogous gene families
Babenko VN, Rogozin IB, Mekhedov SL, Koonin EV
[NUCLEIC ACIDS RES]
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Reconstruction of ancestral protosplice sites
Sverdlov AV, Rogozin IB, Babenko VN, Koonin EV
[CURR BIOL]
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| 2003 |
Computational analysis of mutation spectra
Rogozin IB, Babenko VN, Milanesi L, Pavlov YI
[BRIEF BIOINFORM]
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Evidence of splice signal migration from exon to intron during intron evolution
Sverdlov AV, Rogozin IB, Babenko VN, Koonin EV
[CURR BIOL]
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| 2001 |
The contribution of exon-skipping events on chromosome 22 to protein coding diversity.
Hide WA, Babenko VN, van Heusden PA, Seoighe C, Kelso JF
[GENOME RES]
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| 1999 |
GENEEXPRESS: интегратор баз данных и компьютерных систем, доступных по сети Интернет и предназначенных для изучения экспресии генов эукариот
Н.А.Колчанов, М.П.Пономаренко, А.Э.Кель, Ю.В.Кондрахин, А.С.Фролов, Ф.А.Колпаков, Т.Н.Горячковская, О.В.Кель, Е.А.Ананько, Е.В.Игнатьева, О.А.Подколодная, И.Л.Степаненко, Т.И.Меркулова, В.В.Бабенко, Д.В.Воробьев, С.В.Лаврюшев, Ю.В.Пономаренко, А.В.Кочетов, Г.Н.Колесов, Н.Л.Подколодный, Л.Миланези, Э.Вингендер, Т.Хейнемайер, В.В.Соловьев, Г.К.Овертон
[BIOPHYSICS]
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Integrated databases and computer systems for studying eukaryotic gene expression.
Kolchanov N.A., Ponomarenko M.P., Frolov A.S., Ananko E.A., Kolpakov F.A., Ignatieva E.V., Podkolodnaya O.A., Goryachkovskaya T.N., Stepanenko I.L., Merkulova T.I., Babenko V.N., Ponomarenko J.V., Kochetov A.V., Podkolodny N.L., Vorobyev D.G., Lavrushev S.V., Grigorovich D.A., Kondrakhin Yu.V., Milanesi L., Wingender E., Solovyev V.V., Overton G.C.
[BIOINFORMATICS]
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Investigating extended regulatory regions of genomic DNA sequences
Babenko VN, Kosarev PS, Vishnevsky OV, Levitsky VG, Basin VV, Frolov AS
[BIOINFORMATICS]
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Recognition of NFATp/AP-1 composite elements within genes induced upon the activation of immune cells.
Kel A, Kel-Margoulis O, Babenko V, Wingender E.
[J MOL BIOL]
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Use of a rank correlation coefficient for comparing mutational spectra
Babenko VN, Rogozin IB
[BIOPHYSICS]
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| 1998 |
A genetic algorithm for designing gene family-specific oligonucleotide sets used for hybridization: the G protein-coupled receptor protein superfamily
Kel A, Ptitsyn A, Babenko V, Meier-Ewert S, Lehrach H.
[BIOINFORMATICS]
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Eukaryotic mRNAs encoding abundant and scarce proteins are statistically dissimilar in many structural features.
Kochetov AV, Ischenko IV, Vorobiev DG, Kel AE, Babenko VN, Kisselev LL, Kolchanov NA.
[FEBS LETT]
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GeneExpress: a computer system for description, analysis, and recognition of regulatory sequences in eukaryotic genome.
N.A. Kolchanov, M.P. Ponomarenko, A.E. Kel, A.S. Frolov, F.A. Kolpakov, T.N. Goryachkovsky, O.V. Kel, E.A. Ananko, E.V. Ignatieva, O.A. Podkolodnaya, V.N. Babenko, I.L. Stepanenko, A.G. Romashchenko, T.I. Merkulova, D.G. Vorobiev, S.V. Lavryushev, A.V. Kochetov, G.B. Kolesov, V.V. Solovyev, L. Milanesi, N.L. Podkolodny, E. Wingender, T. Heinemeyer
[Proc Int Conf Intell Syst Mol Biol]
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| 1996 |
Олигонуклеотидные словари изофункциональных семейств генов, кодирующих белок
Колчанов Н.А., Бабенко В.Н., Вишневский О.В., Кель А.Э.
[Doklady Akademii Nauk]
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| 1995 |
Identification of cDNA sequences by specific oligonucleotide sets. Computer tool and application.
Kolchanov NA, Vishnevsky OV, Kel AE, Shindyalov IN
[Proc Int Conf Intell Syst Mol Biol]
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Распределение транскриптов Bsp-повторов Canidae в почке песца: структурное сходство Bsp-повторов с SINEs
Михайлова С.В., Бабенко В.Н., Ромащенко А.Г., Беляева Т.А., Мелиди Н.Н., Лавриненко В.А., Гувакова Т.В., Иванова Л.Н.
[Доклады АН СССР]
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| 1991 |
Comparison of asymptotic tests of the Hardy-Weinberg distribution.
Ginzburg E.Kh, Axenovich TI, Babenko VN
[ANN HUM GENET]
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